Eureka! Outputs
Stage 2 through Stage 6 of Eureka!
can be configured to output plots of the pipeline’s interim results as well as the data required to run further stages.
Stage 2 Outputs
If skip_extract_1d
is set in the Stage 2 ECF, the 1-dimensional spectrum will not be extracted, and no plots will be made. Otherwise, Stage 2 will extract the 1-dimensional spectrum from the calibrated images, and will plot the spectrum.
Stage 3 Outputs
In Stage 3 through Stage 5, output plots are controlled with the isplots_SX
parameter. The resulting plots are cumulative: setting isplots_S3 = 5
will also create the plots specified in isplots_S3 = 3
and isplots_S3 = 1
.
- In Stage 3:
If
isplots_S3
= 1:Eureka!
will plot the 2-dimensional, non-drift-corrected light curve, as well as variations in the source position and width on the detector.
If
isplots_S3
= 3:Eureka!
will plot the results of the background and optimal spectral extraction steps for each exposure in the observation as well as the cleaned median frame.
If
isplots_S3
= 5:Eureka!
will plot the Subdata plots from the optimal spectral extraction step.
Stage 4 Outputs
- In Stage 4:
If
isplots_S4
= 1:Eureka!
will plot the spectral drift per exposure, the drift-corrected 2-dimensional lightcurve with extracted bins overlaid, and the 1D light curves.
If
isplots_S4
= 3:Eureka!
will plot the cross-correlated reference spectrum with the current spectrum for each integration, and the cross-correlation strength for each integration.
Stage 5 Outputs
- In Stage 5:
If
isplots_S5
= 1:Eureka!
will plot the fitted lightcurve model over the data in each channel. If fitting with a GP, an additional figure will be made showing the GP component. Finally, an additional plot compares the fits from different fitters.
If
isplots_S5
= 3:Eureka!
will plot an RMS deviation plot for each channel to help check for correlated noise, plot the normalized residual distribution, and plot the fitting chains for each channel.
If
isplots_S5
= 5, and ifemcee
ordynesty
were used as the fitter:Eureka!
will plot a corner plot for each channel.
Stage 6 Outputs
- In Stage 6:
If
isplots_S6
= 1:Eureka!
will plot the transmission or emission spectrum, depending on the setting ofy_unit
. If a model is provided, it will be plotted on the same figure along with points binned from that model to the resolution of the data.
If
isplots_S6
= 3:Eureka!
will make another transmission plot (ify_unit
is transmission type) with a second y-axis which is in units of atmospheric scale height.